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As far as my reading of the problem, and my own personal experience, the nearest I can get to the cause of the disappearing file system syndrome in SD cards is a situation where you have multiple concurrent file writes e.g. an internet cache. Note - your files haven't disappeared! It's only the file allocation tables that have been corrupted. The files are still there, and should still be recoverable with decent file recovery software.
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"A planner is a gentle man, with neither sword nor pistol.
He walks along most daintily, because his balls are crystal."
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